SE2520595

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1825
  • Brachypodium distachyon
  • SE2520595
  • Mutator
  • M34
  • Bd4:34382366-34383054
  • TTGTAAAAT
  • GAGATAAATACATCCGCGGTCCTACTTTTATTGTCGTGGTGTCAGTTTAGTCCTAAAACTATGAAACTGAACACTTTAGTTCTAATTTATGATAAGTGGTGCACGCGAGGTCCTAAGCTCGCTTGGGCGCGTCTGACTCGCCTACATGACACGTTGACCGCGTACACGTCGGCTCAGGGACGTTTGGCGGGAGTTTTGCCACCGTGGCGGTTGTGATTTTTTGCAGAAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTGTAAAAT   A                    C                                            AAC                -                    ----   C                                 A  A           C               G GAC       G           A C          T              AA --AAAT    GGCACATGCACTTCACAGGAGGAAGGGCAGCATCTGAGTAAGGCCTCGAATCTGATGCAAGAGGGGCCGAATCCTCCTTCCCTTTTGCTGACA
         GAG TAAATACATCCGCGGTCCTA TTTTATTGTCGTGGTGTCAGTTTAGTCCTAAAACTATGAAACTG   ACTTTAGTTCTAATTT ATGATAAGTGGTGCACGCGA    GGT CTAAGCTCGCTTGGGCGCGTCTGACTCGCCTAC TG CACGTTGACCG GTACACGTCGGCTCA G   GTTTGGC GGAGTTTTGCC C GTGGCGGTTG GATTTTTTGCAGAA  C      CATG                                                                                             
         ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |   ||||||| ||||||||||| | |||||||||| ||||||||||||||  |      ||||                                                                                              
         CTC ATTTATGTAGGCGCCAGGAT AAAATAATAGCGCCACAGTCAAATCAGGATTTTGATACTTTGAC   TGAAATCAGGATTAAA TACTATTCACCACGTGCGCT    CCA GATTCGAGCGAGCCCGCGCAGACTGAGCGGATG AC GTGCAACTGGC CATGTGCAGTTGAGT C   CAAACCG CCTCAAAACGG G CGCTGCCAAC CTAAAAAACGTTTT  G      TTTT                                                                                             
TAAAATGTT   C                    A                                            CTA                A                    CGAT   A                                 C  C           T               A ACA       G           C T          C              GG GGGATA    TGCACCGGTGGAAGGAGAGAGACAAAGGAACAGGAGAGAAGAGTCAACAGCGGCGGTGGCGGTACTGTTGCTCCAACTACCGGTTGAGGAGGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End