Plant MITE

SE2550619

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1849
Brachypodium distachyon
SE2550619
PIF/harbinger
To29
Bd3:59297592-59297890
TAA
AGGGCATGTACAATGG

Secondary structure and sequence

TSD TIR

5'

3'

TA             T  -    - A -   -   G             ATTTT  TGAGGTGGAGGAAAGAGATTGAGAAAAGAGAGTAGACTGTCTGTAGTTCTATAGACAATCTAATAGACAAACTATAGACAGATTATTTACCATTGTATG
  AGGGCATGTACAA GG GGCT G T TTA GGT TCTATAAGAGGTA     GC                                                                                                   
  ||||||||||||| || |||| | | ||| ||| |||||||||||||     ||                                                                                                    
  TCCCGTACATGTT CC TGTC G T AGT TGT GGGTAGGTAGATA     TT                                                                                                   
AA             T  A    A - C   C   -             -----  ACAAAACGTGCACTAAATATCTGTTAAAATGTCTATCACATATGTTAACAGACAAACATTCGACAGATTTTTTAGAGATGTTTTTTATATTTGTACTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550619

TAAGGGCATGTACAATGGGGCTGATTTAGGTGTCTATAAGAGGTAATTTTGCTGAGGTGGAGGAAAGAGATTGAGAAAAGAGAGTAGACTGTCTGTAGTTCTATAGACAATCTAATAGACAAACTATAGACAGATTATTTACCATTGTATGCCTCATGTTTATATTTTTTGTAGAGATTTTTTAGACAGCTTACAAACAGACAATTGTATACACTATCTGTAAAATTGTCTATAAATCACGTGCAAAACATTATAGATGGATGGGTGTCTGACTGACTGTACCTTTGTACATGCCCTAA

Copy Cancel