SE2550622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1852
  • Brachypodium distachyon
  • SE2550622
  • PIF/harbinger
  • To23
  • Bd2:33087087-33087408
  • TAA
  • AGGTAGTGTTTGGTTCTAGAACGAGGTGGAATGGAACGGAACGGTTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CT   --AC   G          C    C       --TTCT         -       AATGGAACGGTTCTACTTTTCTATATCCTAAGAACCAAACACTTAGATCACTGGTTCTACTTGGAACCAACTCATTCCTACATTTTTG
  AGGTAGTGTTTGGTT  AGA    GAG TGGAATGGAA GGAA GGTTCTA      TATAGGAAT GGAATGT                                                                                        
  |||||||||||||||  |||    ||| |||||||||| |||| |||||||      ||||||||| |||||||                                                                                         
  TCCATCACAAACCAA  TCT    CTT ACCTTACCTT CCTT CCAAGGT      CTCTACTAA GACACAA                                                                                        
AA               -C   AGTA   G          A    A       TTTCAA         G       ACCAAGAATCTTGTGTCTATTCACCTTACCTTGGTATACCAAGGAGTTTTCCCTTATAAGAGAGTTATACGGATTAGTAGAGTAAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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