SE2520631

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1861
  • Brachypodium distachyon
  • SE2520631
  • Mutator
  • M6
  • Bd3:28131412-28131969
  • TTTAGCGTA
  • GCGTAGAGTAAAATACACATCCAGTTCATGAACTCGACAAAAATGAATACTTTAGTCCACAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTA  -GT              AT C              AC                      A  ATCAA    C              C          CA                            GG              C         G            -T    C      TTCACCGGCGTCCTCTCGTCAAAATTGAGCATTGTGGGCTTGATAGCGACCTTAGGCGAGGCAGCGGCATAAACGGCGTGGTTCTCACGGCCCCAG
    GC   AGAGTAAAATACAC  C AGTTCATGAACTCG  AAAAATGAATACTTTAGTCCAC AA     AAAA GCACACTTAAACCC TAAACTGGGA  ACCGTGTCACTTTAGTCCAAAAACGATT  ACGAGGCTTAAACA GCCACGTGG CGCCATGTCGGC  TCGG GACCCC                                                                                                
    ||   ||||||||||||||  | ||||||||||||||  |||||||||||||||||||||| ||     |||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||  |||| ||||||                                                                                                 
    CG   TCTCATTTTATGTG  G TCAGGTACTTGAGC  TTTTTACTTGTGAAATCAGGTG TT     TTTT CGTGTGAATTTGGG ATTTGACCCT  TGGCACAGTGAAATCAGGTTTTTGCTAA  TGCTCCGAATTTGT CGGTGTACT GCGGTGCAGCCG  GGTC CTGGCG                                                                                                
 ATA  ATT              GT A              CA                      C  GAACC    A              C          AA                            GG              A         G            CC    -      CCCGACGATGAGCTAAAAGAGTCCTAAACAAAAAAACGTTTTAGTGGTACAGGCTCGCGGGTACTCCCCGTTCCGTCGGCGCGGGTCTGCCTCTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End