SE2530637

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1867
  • Brachypodium distachyon
  • SE2530637
  • hAT
  • Hat9
  • Bd1:64000709-64001016
  • CCCTCAGC
  • TATACCTTGGCATGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCTCAGC       T    -----                   ---G   C   CCGAAGCCTGACGTCCTGGGCCGGGCTCGGGCCTCACTTTCCAATCTCAAGCCCGGCCCGAAAGCCCGAAATGACTAAAAACGGGTATTTTTTAGGAAAAATA
        TATACCT GGCA     TGGGTGGCCTAGCCCGGCC    GTC GGC                                                                                                       
        ||||||| ||||     |||||||||||||||||||    ||| |||                                                                                                       G
        ATATGGA CCGT     ACCCGGCCCGGCCCGAAGT    TCG GGC                                                                                                       
CGACTCCC       C    TTGGG                   ATTT   -   TGCCAGTTTGGACTTCGGGCTCGGGCCGGGCCGGGCTTTAGGGCTTTTATCCGGTAAATTCGTAATTTTATTAATAAAAGCTTTATTTATTTACTAAAATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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