SE2530647

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1877
  • Brachypodium distachyon
  • SE2530647
  • hAT
  • Hat32
  • Bd4:7117337-7117514
  • GATGGAAC
  • CTATGGATGTAAATGGGCGCCGGTAAGGGCCCGTTAGAGTCCGTTTAACCTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGGAA   T      A     -----------      G  AG        -A     C    AA      CACA    ------------------     AACA
       CTA GGATGT AATGG           GCGCCG TA  GGCCCGTT  GAGTC GTTT  CCTTGC    ACAG                  TCTTT    
       ||| |||||| |||||           |||||| ||  ||||||||  ||||| ||||  ||||||    ||||                  |||||     
       GAT CCTACA TTGCC           CGCGGC GT  TCGGGCGA  TTCAG CAAA  GGGGCG    TGTC                  AGAAA    
CAAGGTA   C      G     TCGCCAATTAC      G  --        CA     -    -G      ----    AAAAAGCAAAACCTAAAA     AACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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