Plant MITE

SE2530649

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1879
Brachypodium distachyon
SE2530649
hAT
Hat20
Bd2:27134373-27134546
CTGATCCG
GATCCGTACAGGTGCAACGTGGTGACACTCAGGGTACCCTTTGATCCTCAGTTCAAACAAATGAACTAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

CT    C   C  G      GTG     A   A     CC     --ATC  C      AA          --      TCAA     TGT
  GATC GTA AG TGCAAC   GTGAC CTC GGGTA  CTTTG     CT AGTTCA  CAAATGAACT  AGTTTT    AAAAT   
  |||| ||| || ||||||   ||||| ||| |||||  |||||     || ||||||  ||||||||||  ||||||    |||||    
  CTAG CAT TC ACGTTG   CACTG GAG CCCAT  GAAAC     GA TCAAGT  GTTTACTTGA  TCAAAA    TTTTA   
GC    T   C  G      AAA     G   C     AT     GCGAT  A      TG          TT      ----     CTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530649

CTGATCCGTACAGGTGCAACGTGGTGACACTCAGGGTACCCTTTGATCCTCAGTTCAAACAAATGAACTAGTTTTTCAAAAAATTGTGTCATTTTAAAACTTTAGTTCATTTGGTTGAACTAAGTAGCGCAAAGTATACCCCGAGGGTCACAAAGTTGCAGCTCTACTGATCCG

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