Plant MITE

SE2510653

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1883
Brachypodium distachyon
SE2510653
Tc1/Mariner
St2
Bd2:16654355-16654573
TA
TACTCCCTCCGTTCCGGTTTATGGGGCCCCCACGCATACCTAGGTTGAAAATTTAACTAATGTAACATGAGTTTTATATCACAAAAATTATATCATTAG

Secondary structure and sequence

TSD TIR

5'

3'

    C             T           C   C TA           A           G        G                            AAACTTCAAA
TACT CCTCCGTTCCGGT TATGGGGCCCC ACG A  CCTAGGTTGAA ATTTAACTAAT TAACATGA TTTTATATCACAAAAATTATATCATTAG          
|||| ||||||||||||| ||||||||||| ||| |  ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||          T
ATGA GGAGGCAAGGCCA ATACCCCGGGG TGC T  GGATCCAATTT TAAATTGATTA ATTGTACT AAAGTATAGTGTTTTTAATATGGTAATC          
    T             T           T   C AG           C           A        A                            CTTTATCTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510653

TACTCCCTCCGTTCCGGTTTATGGGGCCCCCACGCATACCTAGGTTGAAAATTTAACTAATGTAACATGAGTTTTATATCACAAAAATTATATCATTAGAAACTTCAAATGTTCTATTTCCTAATGGTATAATTTTTGTGATATGAAAATCATGTTAAATTAGTTAAATCTTTAACCTAGGGATCCGTTGGGGCCCCATATACCGGAACGGAGGTAGTA

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