SE2510661

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1891
  • Brachypodium distachyon
  • SE2510661
  • Tc1/Mariner
  • St47
  • Bd4:28176751-28177144
  • TA
  • TACTCCCTCCTTTTTTAATATAGGGCGTATAAAATTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
          -      AA      G        ATT   ATC      CCTGAATATAAAGCACGCAACTGCCCCATCCATGCGCTGGCGAGATTTGCCGAATCCTCTGCCCGTCTCACGCGCTGGAACGGTTTGGCTGCTAACTCAAAAAACGCACGCGTTGTGCTCCCGTGGAGAAAAGGAGGCAGCCTGTGGTTG
TACTCCCTCC TTTTTT  TATAGG CGTATAAA   TTC   CGTTTT                                                                                                                                                      
|||||||||| ||||||  |||||| ||||||||   |||   ||||||                                                                                                                                                      C
ATGAGGGAGG AAAAAG  ATATTC GCATATTT   AAG   CGCGAT                                                                                                                                                      
          C      AA      G        ---   -AT      TATAATTGCGTTCGATGGTCTCGATGGCTTGACTAGCTACCTTCCACAATCATACACGAGGGTGTACCGTTAACCGGGAACAACTGAAGGCGTACCGTTGACGGACTAAAAAAAAATCTTCTCCGTTGACGGGCTACACGTATGTACGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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