SE2550663

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1893
  • Brachypodium distachyon
  • SE2550663
  • PIF/harbinger
  • To14
  • Bd3:47165250-47165575
  • TAA
  • ACAGCTCGTTTGGCACCTATCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A            ATAA     GAATTCATTTTGAATTCTATAAACTAACTTGTTTGGTTGGCACGGAATTGACTACATGAATTCAATTTGCAATTTCATGAAATCACAATACAACTAACCTCAATTTCTCTCTACAAACCGTCA
  ACAGCTCGTTTGGCACCT TCATTTGGGATT    TTGTG                                                                                                                           
  |||||||||||||||||| ||||||||||||    |||||                                                                                                                            
  TGTCGAGCAAACCGTGGG AGTAAAGTAAAG    TAAAC                                                                                                                           
AA                  G            ----     CAGGTTTACTTTTACTTTATATTAAAAACCATCCTAAGGTAAACCAACTTAAACTTATGGCCTAAGTTTTTAGTACAAACAGATGGTGTACCTAAACATCTCAATCTCTGTTAAGGTCTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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