SE2550667

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1897
  • Brachypodium distachyon
  • SE2550667
  • PIF/harbinger
  • To11
  • Bd4:32338778-32338939
  • TCA
  • AGTTTGGCATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TC            CTGAAC   GCTGC   GAACTTATTTTATAATCTATTTTGGAAAAATAAACACGAAAGTAGGGAGAAGT
  AGTTTGGCATTG      TGT     GCT                                                     
  ||||||||||||      |||     |||                                                     T
  TCAAACCGTAAC      CCT     AAT                                                     
AC            --TCCA   -----   ACTATTAGGTCGAAAAGGTTGGTCGAAAACAGATAAAAGCAAAAACTGATTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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