SE2510671

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1901
  • Brachypodium distachyon
  • SE2510671
  • Tc1/Mariner
  • St1
  • Bd1:29859563-29859847
  • TA
  • TACTCCCTCCGTCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
                -----A   AGGTGTACATTTGCCTTTGTTCTAAGTCAAAGTTTCAAGTTTCTAAAGTTTGACCAACTTTGCACAAAATGGTAGCAACATATGTGATGTCAAAGTTGTATATTATGAAACTATATTTGA
TACTCCCTCCGTCCGC      AAT                                                                                                                        
||||||||||||||||      |||                                                                                                                         
ATGAGGGAGGCAGGCG      CGT                                                                                                                        
                CTTATT   CAGGCACGCTTATTCACATGTAAACAGAAACAGGATTCAGTTTCAAGAATTTCAAACTGGTTGAAAGATTCTTTTTCATTATCGTAAATACTGTAGTTTAATCATAGTGATCTAAGCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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