SE2550684

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1914
  • Brachypodium distachyon
  • SE2550684
  • PIF/harbinger
  • To16
  • Bd3:29118899-29119220
  • TAA
  • AGGCCTTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             CACTA     TTTTTGGGTGTTTTCTAGGGTATTATCCACTCCAAATTGAAAAATACTAGAAACCCCAAAATGGTTGTTTGGTAGGAAGGGATTAGAGGGGATTATCCCTAGTTTTCCCCCACAAAAGACTCCATTTTTATACCAAA
  AGGCCTTGTTTGG     GAGTT                                                                                                                                         
  |||||||||||||     |||||                                                                                                                                          
  TCCGGAACAAACC     GTCAC                                                                                                                                         
AA             --ACA     AAAAAAAATAAGTGATCACAAAACCCAAAAACTCCCCAAACCCACTTGTGGGCTTCAAGTGGGTTTGGGGAGTTTATGGTTTGGGTTTGGGGAGTTTATGGTTTTGTGATAACAAAAAAAAAACACTTCACAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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