SE2550688

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1918
  • Brachypodium distachyon
  • SE2550688
  • PIF/harbinger
  • To27
  • Bd3:36198154-36198450
  • TTA
  • AGGGCCTCTTTGATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G             -------   GAAACGCAGGAATAGAAAAAATACAGGGTCAAAGTGGCATGTCATTTTCAATACTACAGGAATTAGATGATGTTTGATTGTGCACAGAAAAAATATAGGATTCTTACAATGAGGTTGGACTGG
  AGG CCTCTTTGATTCA       TCC                                                                                                                           
  ||| |||||||||||||       |||                                                                                                                            
  TCC GGGGAAACTAAGT       AGG                                                                                                                           
AT   G             TTCCTTA   TTTCCTAAAAACCTCCTAAAGCTTTTTTTAAGGATGCACCAAGCAAACTAAGTTTCCTAATGTTTGGTATCCTTTAAAAAGGAATCCTAAGTAAAGATGATCCAAAACATCCTTTTTAAGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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