Plant MITE

SE2510691

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1921
Brachypodium distachyon
SE2510691
Tc1/Mariner
St8
Bd3:19217843-19218082
TA
TACTCCCTCTGTCCCTAATTAATTGGCGCCGGCCTTTTTGCAAAGAAACCCCTGTAAATTTTCGAAAAAACCTGCAGTCCAC

Secondary structure and sequence

TSD TIR

5'

3'

                                 C                 C               -               ATCTTCAATTA    TGGACTGCGCGTTAATTTCGAAAATTTA
TACTCCCTCTGTCCCTAATTAATTGGCGCCGGC TTTTTGCAAAGAAACCC TGTAAATTTTCGAAA AAACCTGCAGTCCAC           AACG                            
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||           ||||                             
ATGAGGGAGGCAGGGATTAATTAACCGCGGCCG AAAAACGTTTCTTTGGG ACATTTAAGGGCTTT TTTGGACGTCAGGTG           CAAG                            
                                 T                 T               A               -----------    ATAACCTTGAAAACACTTTTTTGGGGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510691

TACTCCCTCTGTCCCTAATTAATTGGCGCCGGCCTTTTTGCAAAGAAACCCCTGTAAATTTTCGAAAAAACCTGCAGTCCACATCTTCAATTAAACGTGGACTGCGCGTTAATTTCGAAAATTTAAAGGGGTTTTTTCACAAAAGTTCCAATAGAACGTGGACTGCAGGTTTATTTCGGGAATTTACATGGGTTTCTTTGCAAAAATGCCGGCGCCAATTAATTAGGGACGGAGGGAGTA

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