Plant MITE

SE2520694

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1924
Brachypodium distachyon
SE2520694
Mutator
M11
Bd1:5834276-5834415
AAAGAAAAC
CGGCAAGTATTCTCTGACTTAAGTCACCTGCCTTTGTGAGGCTGACAAGTGGGCCAT

Secondary structure and sequence

TSD TIR

5'

3'

AAAGAAAAC   CAA T                                     CAA     --    CCA
         CGG   G ATTCTCTGACTTAAGTCACCTGCCTTTGTGAGGCTGA   GTGGG  CCAT   
         |||   | |||||||||||||||||||||||||||||||||||||   |||||  ||||    
         GCC   C TAAGAGACTGAATTCAGTGGACGGAAACACTCCGACT   CACCC  GGTG   
CAAAAGAAA   ACA C                                     TTA     AG    TCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2520694

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2520694