SE2550698

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1928
  • Brachypodium distachyon
  • SE2550698
  • PIF/harbinger
  • To30
  • Bd1:65214741-65215042
  • TAA
  • AGGGCATCCGCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  G      AACCGACTCTTATTTAAAAATTGCTCATGTGAAGGAAAGAGAAATTGGAGAGAGAAGAGAATCGATTCTTCGTGAAGAGTCACACTCTTAAAGAAAGAATCGACTAAGAGTGTTAGCTAAGAGT
  AGGGCATCCGCAATGTCT TCTCTT                                                                                                                            
  |||||||||||||||||| ||||||                                                                                                                            C
  TCCCGTAGGCGTTACCAC CTCAGT                                                                                                                            
AA                  -      AATGACTGAGAAGTGCACTAAATCCCAGTTGCCATTTTATTGTGCACGTTACTAAACACAGAAATTTGACTGAGATCTACTAGACAATCGTAATTTACGCTACAACGTGTTACCAATTTTCCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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