Plant MITE

SE2510699

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1929
Brachypodium distachyon
SE2510699
Tc1/Mariner
St50
Bd4:6286710-6286957
TA
TACTCCCTCCGTCCGCGAATAAGTGTACATTTGCATTTGTCCTAAGTCAAAGTTTTTAAAGTTTGAACAACTTTGTAGAAAATAGTAGCAACATATATGATGTCAAAGTTGTA

Secondary structure and sequence

TSD TIR

5'

3'

                          A       A                               A       G       TA  A   A   A            GTT   ATATTT  AGA
TACTCCCTCCGTCCGCGAATAAGTGT CATTTGC TTTGTCCTAAGTCAAAGTTTTTAAAGTTTGA CAACTTT TAGAAAA  GT GCA CAT TATGATGTCAAA   GTA      GA   
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||  || ||| ||| ||||||||||||   |||      ||   T
ATGAGGGAGGCAGGCGCTTATTCACA GTAAACG AAACAGGATTCAGTTTCAAAAATTTCAAACT GTTGAAA ATTTTTT  CA CGT GTA ATACTGTAGTTT   CAT      CT   
                          C       A                               G       G       -C  C   C   A            AAT   AGTCAT  AGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510699

TACTCCCTCCGTCCGCGAATAAGTGTACATTTGCATTTGTCCTAAGTCAAAGTTTTTAAAGTTTGAACAACTTTGTAGAAAATAGTAGCAACATATATGATGTCAAAGTTGTAATATTTGAAGATGGATCTACTGATACTAATTTGATGTCATAAATGCTGCCACCTTTTTTAGAAAGTTGGTCAAACTTTAAAAACTTTGACTTAGGACAAAAGCAAATGCACACTTATTCGCGGACGGAGGGAGTA

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