SE2550709

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1939
  • Brachypodium distachyon
  • SE2550709
  • PIF/harbinger
  • To16
  • Bd3:28895078-28895371
  • TAA
  • AGGCCTTGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              -----ACTAGAGTTT    -         --    T  T -   A  GCAAATTGAAAAACACTAGAAACCCCAATTGGTTGTTTGGTAGGAAGGGTTTAGAGGGGATTATCCCTAGTTTCCCCCCACAAAACACT
  AGGCCTTGTTTGGT               TGGG GTGTTTTCT  AGGG AT A TCC CT                                                                                         
  ||||||||||||||               |||| |||||||||  |||| || | ||| ||                                                                                         C
  TCCGGAACAAACCA               GTGA CACAAAACC  AAAC TC C AAA CC                                                                                         
AA              CAACATAAAAAATCA    C         AT    -  C C   -  CACAAGTAGGTTTTGAGAGTTTTTGGGTTTTGTGATCACAAAAATCTTTTCGTGATCATATTCTTCACAAAATTAAACCATGTTTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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