SE2520710

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1940
  • Brachypodium distachyon
  • SE2520710
  • Mutator
  • M8
  • Bd4:9135147-9135644
  • TACATATAT
  • ATATATGAGTAAATTTCACAGAACCACACTTTTGTGGCAGTGGTCTCACAAAATCACAGTTGTTACTAACATTCTCACAAAACCACAACTCTTGGGGCAGAGAGTCTCAAAAAACCCTAAACTCGATGATTAGGCGGCTTGATGATGTTTTTGACGCCCCGGGCCCACA

Secondary structure and sequence

TSD    TIR
5'



3'
TAC      ---          C                -           C                   A      T                            A                   A      G                A         C C            A   GG ATTGGAGACGGGTCGAGGAGGCTGACGTGGCAACTGACTTGTGGGCCGTGGCATTGGAGACGGATAGGGAA
   ATATAT   GAGTAAATTT ACAGAACCACACTTTT GTGGCAGTGGT TCACAAAATCACAGTTGTT CTAACA TCTCACAAAACCACAACTCTTGGGGCAG GAGTCTCAAAAAACCCTAA CTCGAT ATTAGGCGGCTTGATG TGTTTTTGA G CCCGGGCCCACA CGT  C                                                                       
   ||||||   |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| | |||||||||||| |||  |                                                                        
   TATATA   CTCATTTAAA TGTCTTGGTGTGAAAA CACCGTCACCA AGTGTTTTGGTGTCAACAA GATTGT AGAGTGTTTTGGTGTTGAGAACCCCGTC CTCAGAGTTTTTTGGGATT GAGTTA TAATCCGCCGAACTAC ACAAAAACT C GGGCCCGGGTGT TCA  G                                                                       
         CAT          T                A           A                   C      C                            C                   A      A                C         A T            -   -- TCAACGGTGCAGTCGGAAGGGCTGGGCAGAGGTTACGGTGGACCCAGGTGTTCAGTCAACAGTGCAGTCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End