SE2530712

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1942
  • Brachypodium distachyon
  • SE2530712
  • hAT
  • Hat9
  • Bd5:27251776-27252086
  • CTTGAGAT
  • CTTGAGATTATACCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
        AT            AACCCC                  TAAAA   TGACGGTCAAACCTGAAGCCCGAGCCCGGCCCGGCCCGAAACACCGAAAATAGGCTATTTAAGCATTAAAATAATTATTTTCGAAATAAATAAATGATTTTTATAC
  CTTGAG  TATACCTGGGCA      GGGCCGGGCCGGGCTTCA     GCC                                                                                                          
  ||||||  ||||||||||||      ||||||||||||||||||     |||                                                                                                          C
  GAGTTC  ATATGGACCCGT      CCCGGCCGGGCCGGGCTT     CGG                                                                                                          
TA      --            -ACCCA                  -----   GCTGCAGGGCCCGGCCCGAGCCCGTAGGGAAAAGTCAGGGTTCGAGCCGGACTTTCGGGTTTTTTCGGGCTTTACTGATTTTTGCCCATAAAAAATTCCTTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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