Plant MITE

SE2520721

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1951
Brachypodium distachyon
SE2520721
Mutator
M37
Bd5:28404586-28404891
CTTGCTCGC
GCTCGCGAATTTTTTGCGGCAATGGCCTCCTGGCCAACGTTTTTGACAAAATTGGCCTCCTCCGAAACGAAATTGCAAAAGTAGCCTGGCGAAAGGCC

Secondary structure and sequence

TSD TIR

5'

3'

 CTT  TC C               A     T     CC           C        C                                   A      TTGG       GG   AAAA        --    CAAACACTGCGCATGTACTGCTAC
    GC  G GAATTTTTTGCGGCA TGGCC CCTGG  AACGTTTTTGA AAAATTGG CTCCTCCGAAACGAAATTGCAAAAGTAGCCTGGCG AAGGCC    CGGAAGG  GGC    GCGTGGCT  CGCA                        
    ||  | ||||||||||||||| ||||| |||||  ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    |||||||  |||    ||||||||  ||||                         
    CG  C CTTGAAAAACGCCGT ACCGG GGGCC  TTGCAAAAACT TTTTGACC GGGGAGGCTTTGTTTTAACGTTTTCATCGGACCGC TTTCGG    GTCTTTC  CTG    TGCACCGG  AGGC                        
CGCT  TT -               C     -     TT           A        A                                   C      ----       -G   ----        AA    GGTTGCGGTAACCGCCTTACGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520721

CTTGCTCGCGAATTTTTTGCGGCAATGGCCTCCTGGCCAACGTTTTTGACAAAATTGGCCTCCTCCGAAACGAAATTGCAAAAGTAGCCTGGCGAAAGGCCTTGGCGGAAGGGGGGCAAAAGCGTGGCTCGCACAAACACTGCGCATGTACTGCTACAGTGCATTCCGCCAATGGCGTTGGCGGAAAGGCCACGTGTCGCTTTCTGGGCTTTCCGCCAGGCTACTTTTGCAATTTTGTTTCGGAGGGGACCAGTTTTATCAAAAACGTTTTCCGGGGGCCACTGCCGCAAAAAGTTCCTTGCTCGC

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