Plant MITE

SE2510722

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1952
Brachypodium distachyon
SE2510722
Tc1/Mariner
St4
Bd2:20602448-20602690
TA
TACTCCCTCCGTCCAACAATAGGGGGCATATTAGGGTTCGGTTGACCAAGCCTTTGACCACAAATTACTTCATGAATATGTGACTAATGTGAT

Secondary structure and sequence

TSD TIR

5'

3'

    C                      A      GG   GG        GC                   C  G         CTA       -CAAAA     A    AAGCAAATA    TG
TACT CCTCCGTCCAACAATAGGGGGC TATTAG  TTC  TTGACCAA  CTTTGACCACAAATTACTT AT AATATGTGA   ATGTGAT      TCATA CCAT         TCCT  
|||| |||||||||||||||||||||| ||||||  |||  ||||||||  ||||||||||||||||||| || |||||||||   |||||||      ||||| ||||         ||||  A
ATGA GGAGGCAGGTTGTTATCCCCCG ATAATC  AAG  AACTGGTT  GAAACTGGTGTTTAATGAA TA TTATATATT   TATACTG      AGTAT GGTA         AGGA  
    T                      C      GA   GA        AC                   A  A         -AA       TATCTA     A    ----ATATA    TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510722

TACTCCCTCCGTCCAACAATAGGGGGCATATTAGGGTTCGGTTGACCAAGCCTTTGACCACAAATTACTTCATGAATATGTGACTAATGTGATCAAAATCATAACCATAAGCAAATATCCTTGAGTAGGAATATAATGGATATGAATCTATGTCATATAATTATATATTAATAAAGTAATTTGTGGTCAAAGCATTGGTCAAAGGAAAGCTAATACGCCCCCTATTGTTGGACGGAGGTAGTA

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