Plant MITE

SE2510733

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1963
Brachypodium distachyon
SE2510733
Tc1/Mariner
St54
Bd1:32064865-32065171
TA
TACTCCCTCCTTTCCTTATGTAAGGCCTGATTCCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

              -CT      ---A     G  TCC    -------   A  ---  TCCAC  -T  TA  ------ TCACTTTCTAATTCATCTTTCTTAAACCGTGTCCCATTTAATTGCAAGTCTCTCAGGCTCCAAATCTAGATTAAGTGTGACCAATA
TACTCCCTCCTTTC   TATGTA    GGCCT AT   AAAT       ACG GT   TT     AG  TG  AG      A                                                                                      
||||||||||||||   ||||||    ||||| ||   ||||       ||| ||   ||     ||  ||  ||      |                                                                                       
ATGAGGGAGGAAGG   ATACAT    CCGGG TA   TTTA       ATG GT   GT     TT  CG  TG      G                                                                                      
              TAT      AATG     G  TAC    AGACACC   -  TCC  -----  CT  --  TACAAA TTTTTTCCAAGAGTTAAAGACAAAACCGGTTATCTAAACCTTGGGTTCTCTGAACATCAATTACGTCCAAACCTTACCATCCGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510733

TACTCCCTCCTTTCCTTATGTAAGGCCTGATTCCAAATACGAGTTTTCCACAGTTGTAAGATCACTTTCTAATTCATCTTTCTTAAACCGTGTCCCATTTAATTGCAAGTCTCTCAGGCTCCAAATCTAGATTAAGTGTGACCAATACATGCCTACCATTCCAAACCTGCATTAACTACAAGTCTCTTGGGTTCCAAATCTATTGGCCAAAACAGAAATTGAGAACCTTTTTTGAAACATGTGCTCTTTGCCTTGGTACCACAGAATTTCATATGGGGCCGTAATACATATATGGAAGGAGGGAGTA

Copy Cancel