Plant MITE

SE2540735

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1965
Brachypodium distachyon
SE2540735
CACTA
Ca1
Bd4:47795286-47796075
AGG
CACTACAACACAAATGTCTTGTAGAGACATT

Secondary structure and sequence

TSD TIR

5'

3'

AGG        CAC     T              -TTCATT   GCAATATACTCTTTGTCTGTACCTAGAGACAATTTTGAGACAGAGTTTCATGTAGAGGCAGTATATGAGGCGCTATGGATAATGTCTTAAATATAGAGATACTAGTTGAGACATTATGGTGTAGAGACATTTTTTGAGGCATTTAATAGATTGTCACAAGACTCATGTAGAGACATGGTTTTGAGATACTTGATGAAATGACCTTACGGTATGGTTATAGACACTATTTGAGACAAATTTTATGTTGTGTAGAGACATTCTTAGCAAGTTTGAGACATGTAGCAGACTACTCATAATAGATTCATTAGAAGTATAAGCAAGAATTGGTATCAGGTTGAGATGGTTAGGTGA
   CACTACAA   AAATG CTTGTAGAGACATT       GAG                                                                                                                                                                                                                                                                                                                                                               
   ||||||||   ||||| ||||||||||||||       |||                                                                                                                                                                                                                                                                                                                                                               G
   GTGATGTT   TTTAT GGGCATCTCTGTAA       CAA                                                                                                                                                                                                                                                                                                                                                               
GGA        CTC     C              TAAAAAC   GCATCTCTGTGACATTAACAGAGATGTATTGAAATCTGTGTGAACCATGTTACGGTGTTTTGACGGTGATGCCTGTCACAGCGATACACACTACTCTGTTATTATTTTGCAGAGATAACAAAATCTGTAACGTATCTCTGTGATATGGCAGAGATGTAAAGCATTTCTGTAACGTAACACAGAGATATAAAAAATCTGTAAAGTATCTCTGTGATATAACAGAGATGTAAGTTATGCTGTAAAACATTTCTGTAATTTAACACAGAGATATGAGTACACGATCTTTTATATGTAACTTTTTTAGTACAACTTTGGTTAGGAGCTTGACTTCTGGAATTCCTTTTGATGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2540735

AGGCACTACAACACAAATGTCTTGTAGAGACATTTTCATTGAGGCAATATACTCTTTGTCTGTACCTAGAGACAATTTTGAGACAGAGTTTCATGTAGAGGCAGTATATGAGGCGCTATGGATAATGTCTTAAATATAGAGATACTAGTTGAGACATTATGGTGTAGAGACATTTTTTGAGGCATTTAATAGATTGTCACAAGACTCATGTAGAGACATGGTTTTGAGATACTTGATGAAATGACCTTACGGTATGGTTATAGACACTATTTGAGACAAATTTTATGTTGTGTAGAGACATTCTTAGCAAGTTTGAGACATGTAGCAGACTACTCATAATAGATTCATTAGAAGTATAAGCAAGAATTGGTATCAGGTTGAGATGGTTAGGTGAGTGTGTAGTTTTCCTTAAGGTCTTCAGTTCGAGGATTGGTTTCAACATGATTTTTTCAATGTATATTTTCTAGCACATGAGTATAGAGACACAATTTAATGTCTTTACAAAATGTCGTATTGAATGTAGAGACAATATAGTGTCTCTATGAAATGTCTAAAAAATATAGAGACACAATGCAATGTCTTTACGAAATGTAGAGACGGTATAGTGTCTCTATGCAATGTCTAAAACAATAGAGACGTTTTATTATTGTCTCATCACACATAGCGACACTGTCCGTAGTGGCAGTTTTGTGGCATTGTACCAAGTGTGTCTAAAGTTATGTAGAGACAATTACAGTGTCTCTACGAACCAAAAATAATGTCTCTACGGGCTATTTCTCTTGTAGTGAGG

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