Plant MITE

SE2520743

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1973
Brachypodium distachyon
SE2520743
Mutator
M14
Bd3:39436571-39437160
TTTTTGAAA
TTTTGAAAGGGTTAATTGGATCTATGCCATTATAATTTCTACCGGTTGGAGATATGCCATTACAAAAACTTGACTTGGAGAAATGCCACTCTAACTTTTTTATACCTCTATTCATGCCATTTT

Secondary structure and sequence

TSD TIR

5'

3'

T   T                           -ATA     T                                             C                          C          --C      ACCAGCACGTATACTGTCTAGTACGTATAGACATAGCTCTATACGAACAATTTTTTTCTCATCCCAAGTCAAACAGTTTTATTCCTCTTATTCCCCACGCGTTCCTCATATCCCGTCCCCAACGGTGGACTCATATTACTGTTTTTTATTTTCTGCATTTTTT
 TTT GAAAGGGTTAATTGGATCTATGCCATT    ATTTC ACCGGTTGGAGATATGCCATTACAAAAACTTGACTTGGAGAAATG CACTCTAACTTTTTTATACCTCTATT ATGCCATTTT   TTCAAT                                                                                                                                                                   
 ||| |||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||   ||||||                                                                                                                                                                    
 AAG TTTTCCCAATTAACCTAGATACGGTGA    TAAAG TGGCCAACCTCTATACGGTAATGTTTTTGAACTGAACCTCTTTAC GTGAGATTGAAAGAATATGGAGATAG TACGGTAAGA   GTGAAT                                                                                                                                                                   
A   T                           GAGA     -                                             A                          T          CAG      TCTGGTTATTCACAAGTTGTACATAAAGTCACACATGTTGTTATAAATGGTATTATGAGAATAAATGTTACAAGTCGTCATGCAAGCTTAGAAGGTCCGTGGTATTTCCAATTTTTTTATTAAGTTTAAACTGGGTTTTAAGTTATAAGGGTCTTTTTAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520743

TTTTTGAAAGGGTTAATTGGATCTATGCCATTATAATTTCTACCGGTTGGAGATATGCCATTACAAAAACTTGACTTGGAGAAATGCCACTCTAACTTTTTTATACCTCTATTCATGCCATTTTCTTCAATACCAGCACGTATACTGTCTAGTACGTATAGACATAGCTCTATACGAACAATTTTTTTCTCATCCCAAGTCAAACAGTTTTATTCCTCTTATTCCCCACGCGTTCCTCATATCCCGTCCCCAACGGTGGACTCATATTACTGTTTTTTATTTTCTGCATTTTTTATAAATTTTTCTGGGAATATTGAATTTTGGGTCAAATTTGAATTATTTTTTTAACCTTTATGGTGCCTGGAAGATTCGAACGTACTGCTGAACATTGTAAATAAGAGTATTATGGTAAATATTGTTGTACACACTGAAATACATGTTGAACACTTATTGGTCTTAAGTGGACAGAATGGCATTGATAGAGGTATAAGAAAGTTAGAGTGACATTTCTCCAAGTCAAGTTTTTGTAATGGCATATCTCCAACCGGTGAAATAGAGAGTGGCATAGATCCAATTAACCCTTTTTGAAA

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