SE2520754

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1984
  • Brachypodium distachyon
  • SE2520754
  • Mutator
  • M24
  • Bd1:45381237-45381763
  • ATCTGATTT
  • ATCTGATTTGAGGAAATTACATTGCGGGTACATGAACTTGGCAGCGATGTTCAATTTCATCCATTAACTTAAAAACTCCTCAAATGACTTACTAAACTTGACAGCTTCGCTCATTTTAGTCCAAATGGTTAGATCCGGGCGAAATTCGATCATGAAGCATGTGACGTAGATATGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
     T  TT                     A                       A                A      CC                 C   A      C C             A         TC    C    T   A     -AA       A   A   A     ------AT     -------------- AG   CCGACGAACCCATCGATGGAGCCATTCGCGTGGACGCCGAGTATTCCGGCCCGAAGTGGGTTCA
  ATC GA  TGAGGAAATTACATTGCGGGT CATGAACTTGGCAGCGATGTTCA TTTCATCCATTAACTT AAAACT  TCAAATGACTTACTAAA TTG CAGCTT G TCATTTTAGTCCA ATGGTTAGA  CGGG GAAA TCG TCATG   GCATGTG CGT GAT TGGCC        TCGAG              T  CCG                                                                
  ||| ||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||| ||| |||||| | ||||||||||||| |||||||||  |||| |||| ||| |||||   ||||||| ||| ||| |||||        |||||              |  |||                                                                 
  TAG CT  ACTCCTTTAATGTGACGTCCA GTACTTGAACCGTTGCTACAAGT AAAGTAGGTAATTGAA TTTTGA  AGTTTACTGAGTGATTT AAC GTCGAA C AGTAAAATCAGGT TACCGGTTT  GTCC CTTT AGC GGTGC   CGTACAC GCA CTG ACCGG        TCCCT              A  GAT                                                                
TT   T  --                     G                       C                C      CA                 A   C      A A             C         TA    A    T   C     AAC       A   C   G     CTGCACAC     CGAAAAGTATTAAA --   CAATATCTGGAAAAGACAAATTAGGGGAGCTTAGAGGTCTTACCCTTCTGTGACGGGAACGGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End