Plant MITE

SE2510755

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1985
Brachypodium distachyon
SE2510755
Tc1/Mariner
St3
Bd3:58559674-58559920
TA
TACTCCCTCCGTTCT

Secondary structure and sequence

TSD TIR

5'

3'

                 C  TGTCCTAAGTCAAATTTCTTAAAATTTGATCAAGTTTATAGAAAAATCTACCAACATCTACAACTCTAGACTAGTTTTATTAAATCTGTCATGATATATATCTT
TACTCCCTCCGTTCTAG TT                                                                                                        
||||||||||||||||| ||                                                                                                         
ATGAGGGAGGCAAGGAG AA                                                                                                        
                 -  ATATTCTAAAAAATCAAAACAAGGTTCAGTTTGAAGAATTTCAAACTGGTTTAAATATCTTTTTACATGATTATATCATGTGTTATAGTTTGTTCATACGATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510755

TACTCCCTCCGTTCTAGCTTTGTCCTAAGTCAAATTTCTTAAAATTTGATCAAGTTTATAGAAAAATCTACCAACATCTACAACTCTAGACTAGTTTTATTAAATCTGTCATGATATATATCTTCATAGCATACTTGTTTGATATTGTGTACTATATTAGTACATTTTTCTATAAATTTGGTCAAACTTTAAGAAGTTTGACTTGGAACAAAACTAAAAAATCTTATAAAGAGGAACGGAGGGAGTA

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