Plant MITE

SE2510757

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1987
Brachypodium distachyon
SE2510757
Tc1/Mariner
St1
Bd3:46640652-46640914
TA
TACTCCCTCCGTCCACAAATAAGTGTACTTCTAGGTTTTGTCCTAAGT

Secondary structure and sequence

TSD TIR

5'

3'

                           C                    CAAACTTTTCC      -    AAC       -      G        CA             C    -     T  AA TACATT
TACTCCCTCCGTCCACAAATAAGTGTA TTCTAGGTTTTGTCCTAAGT           AAAGTT GACC   TTTGTTG AAAAGA TAGCAACA  TATGACATCAAAT GGTA CATTA GA  C      
||||||||||||||||||||||||||| ||||||||||||||||||||           |||||| ||||   ||||||| |||||| ||||||||  ||||||||||||| |||| ||||| ||  |      T
ATGAGGGAGGCAGGTGTTTATTCACAT AGGATCCAAAACAGGATTCA           TTTCAA CTGG   AAATAAC TTTTCT ATCGTTGT  ATACTGTGGTTTA TCAT GTAAT CT  G      
                           T                    -CCTTTTATAA      A    CTA       C      -        AA             A    A     -  AG TAAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510757

TACTCCCTCCGTCCACAAATAAGTGTACTTCTAGGTTTTGTCCTAAGTCAAACTTTTCCAAAGTTGACCAACTTTGTTGAAAAGAGTAGCAACACATATGACATCAAATCGGTACATTATGAAACTACATTTCAAAATGGATCTAATGATACTAATTTGGTGTCATAAATGTTGCTATCTTTTCCAATAAAATCGGTCAAACTTTAATATTTTCCACTTAGGACAAAACCTAGGATTACACTTATTTGTGGACGGAGGGAGTA

Copy Cancel