SE2550767

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1997
  • Brachypodium distachyon
  • SE2550767
  • PIF/harbinger
  • To21
  • Bd3:14163627-14163904
  • TTA
  • AGGCTGGCCATAGTGGGGAGTAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       C         G       TAA        ------   GCATATGTTACTAGTCTATGTTACTACTTTAATAGTGGGTAGTAACATATTTGTGGTAACATATAAATCTCATTTATTAGCTTTATAGACTCATT
  AGGCTGG CATAGTGGG AGTAACA   ACTAGTAA      CAT                                                                                               
  ||||||| ||||||||| |||||||   ||||||||      |||                                                                                               G
  TCCGACC GTATTACCC TCATTGT   CACCATTG      CGG                                                                                               
AT       A         -       TTC        ATTTTA   TTGATTCATTATACCCACTACACAGTACAATAATTACTCCTTTCTCTACCAACCTATTGATCTATACAATGGTAGTGTAGTGTGAAGGGTTGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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