SE2530769

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1999
  • Brachypodium distachyon
  • SE2530769
  • hAT
  • Hat6
  • Bd4:42937446-42937627
  • GTACTGTA
  • TACTGTACAGTGGCGGAGCTAGGGGGGTTGCCGGGTGGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
G   T    -       G      -G      G     -       ------------    CCACCCTGAGATTTTCCAATCCTTTATATAACATAGT
 TAC GTAC AGTGGCG AGCTAG  GGGGTT CCGGG TGGTCCA            TGGA                                     
 ||| |||| ||||||| ||||||  |||||| ||||| |||||||            ||||                                      
 ATG CATG TCACCGC TCGGTC  TTTTAA GGTCC ACCAGGT            AAGT                                     
    T    G       A      GA      A     T       TGTCACTTTTAT    ATGTTTAAATCAATAAAACTACAAAACTTAAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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