SE2510771

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2001
  • Brachypodium distachyon
  • SE2510771
  • Tc1/Mariner
  • St2
  • Bd2:9217847-9218067
  • TA
  • TACTCCCTCCGTTCCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C             TTAA          C     TA                       G        G                      C        CTTAAAA
TACT CCTCCGTTCCGGT    ATGGGGCCTC ACGCA  CCTAGGTTGAAGATTTAACTAAT TAACATGA TTTTATATCACAAAAATTATAT ATTAGAAA       
|||| |||||||||||||    |||||||||| |||||  ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||       T
ATGA GGAGGCAAGGCCA    TACCCCGGGG TGCGT  GGATCCAATTTCTAAATTGATTA ATTGTACT AAAATATAGTGTTTTTAATATG TGATCTTT       
    T             --TA          T     AG                       A        A                      A        TATCTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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