SE2530774

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2004
  • Brachypodium distachyon
  • SE2530774
  • hAT
  • Hat38
  • Bd2:50000833-50001191
  • GTTGTACT
  • GTACTCAGGGCCGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTT    --            AGTAGCA         T    GACCAAACAGGCCCCCCTAAAAATTAGGGCCCCAAATTTTCCTTAATTAGTACTACTAAGCACATACTTAATGATGAATTAGTAAAAAAAAACCAAGTGGCACAAGGGAAAAAGGAGAAAGCCCAGAACAGGTGCGTAGA
   GTAC  TCAGGGCCGTAT       GGGGCAGGG GGCC                                                                                                                                            
   ||||  ||||||||||||       ||||||||| ||||                                                                                                                                             
   CATG  GGTCCCGGCATG       AAGTTCCGG GGCC                                                                                                                                            
  T    TT            GATACTT         -    ACGTTTTAGGTTATCACCCGGGATTTTAAACCCTCTACGATCATTGGTTTTATAACAAAACCGGTTACGACAAAAAATCACAACAACAATAATAAACCCTCTGCTTCGTTAGGCACCAGTCCTTAGCTAGTTAGATTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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