SE2530782

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2012
  • Brachypodium distachyon
  • SE2530782
  • hAT
  • Hat40
  • Bd1:24513925-24514098
  • CCCGGTAG
  • CCGGTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
   C        CAGC       C   AAATCCATCAAACTCCA    ATCACGAAAATTACCAACCTAAGACCCAGGCCAAATCTTCAAATCACTAGA
    CCGGTAGA    GGCGGAG CAG                 GGCC                                                   
    ||||||||    ||||||| |||                 ||||                                                    
    GGCCGTCT    CCGCCTC GTC                 CGGA                                                   
AGAT        ----       T   -----------------    GTCCGTCAGGTCCGACGCCGGACTCCGCAACTTACAAAAAAGAAACAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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