SE2550785

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2015
  • Brachypodium distachyon
  • SE2550785
  • PIF/harbinger
  • To21
  • Bd1:15203543-15203821
  • TAA
  • AGGCTGGTCATAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               --    GTA    --   --------G     ACATGCATATGTTACTAGTCTAAGTTCCTACCTCCATAGTGGTTAGTAACTTATGTGTGGTGTCATGCATTGTGTCATTAATTGTCTTGTAGACTCAT
  AGGCTGGTCATAGTG  GGGA   ACTT  AGA         TAGTA                                                                                                  
  |||||||||||||||  ||||   ||||  |||         |||||                                                                                                   
  TCCGACCAGTATCAC  TCAT   TGAA  CAT         TACGG                                                                                                  
AA               AT    ---    CC   CATTATATC     TTGATCCGTAAAACCACTGTACTGTACCGTTATTTACTTCTTTCTCTCACTGCACCATTGATCTATACAATAGTACTGTAGTGTGTTTAGTTCTGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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