SE2550787

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2017
  • Brachypodium distachyon
  • SE2550787
  • PIF/harbinger
  • To46
  • Bd4:28275123-28275268
  • TAA
  • GGGTGCAAACGGGATCCTGCGAAAGTCCCGCTTCTAGTTCAATTCTCAAATCTCCTATTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA                                         A  C        C         TTCTGA
    GGGTGCAAACGGGATCCTGCGAAAGTCCCGCTTCTAGTTCA TT TCAAATCT CTATTCAAA      
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||      G
    CCCACGTTTGCCCTAGGGCGCTTTCAGGGCGAAGATCAAGT AA AGTTTAGA GATAAGTTT      
AATC                                         A  A        A         TAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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