Plant MITE

SE2530791

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2021
Brachypodium distachyon
SE2530791
hAT
Hat41
Bd4:37865670-37865841
CCCAAATA
CAGTGGCGGAGCTGCCATACAACCATTGAGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

CCCAAATA           CT  CAT    --C     A     AATGA    ----   GAAAT  - TAAACACTTCACTAATTGGGTCCTT
        CAGTGGCGGAG  GC   ACAA   CATTG GTTCA     ACCC    AAT     AG T                         
        |||||||||||  ||   ||||   ||||| |||||     ||||    |||     || |                          
        GTCACCGCTTC  TG   TGTT   GTAAC CAAGT     TGGG    AAT     AA A                         
ATAAACCC           CC  TTT    TTA     C     ----C    AAAA   -----  C CATAAAAGGTCATTATTCGTCCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530791

CCCAAATACAGTGGCGGAGCTGCCATACAACCATTGAGTTCAAATGAACCCAATGAAATAGTTAAACACTTCACTAATTGGGTCCTTGTGCCTGCTTATTACTGGAAAATACACAATAAAAAAGGGTCTGAACCCAATGATTTTGTTTTGTCCCTTCGCCACTGCCCAAATA

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