Plant MITE

SE2530795

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2025
Brachypodium distachyon
SE2530795
hAT
Hat9
Bd5:17673298-17673599
ACCCGCGC
CGCGCTATACCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

ACC    --C            AACCCTG    G            TAAAA T  GATGGTCAAACCTGAAGCCCAAGCCTGGCCCGGCCCGAAGTCCGGAAAATTGGCATTTAAGTATTACAATTATTATTTTGGAATAAATAAATATATTTTTA
   CGCG   TATACCTGGGCA       GGCC GGCCGGGCTTCA     G CC                                                                                                     
   ||||   ||||||||||||       |||| ||||||||||||     | ||                                                                                                     T
   GCGC   ATATGGACCCGT       CCGG CCGGCTTCGGGC     C TA                                                                                                     
  C    CCA            --ACCCA    G            ----- A  GCCCGGCCTGGGCCCGAAGTGAAAAGATAGGTTTCGGGCCGGGCTCTCGGGCTTTTATAGGGTTTTACCGGACTCAACTCATAAAAAATCTTTTTTATCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530795

ACCCGCGCTATACCTGGGCAAACCCTGGGCCGGGCCGGGCTTCATAAAAGTCCGATGGTCAAACCTGAAGCCCAAGCCTGGCCCGGCCCGAAGTCCGGAAAATTGGCATTTAAGTATTACAATTATTATTTTGGAATAAATAAATATATTTTTATACCTATTTTTTCTAAAAAATACTCAACTCAGGCCATTTTGGGATATTTTCGGGCTCTCGGGCCGGGCTTTGGATAGAAAAGTGAAGCCCGGGTCCGGCCCGATACCGGGCTTCGGCCGGGCCACCCATGCCCAGGTATAACCCGCGC

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