SE2530799

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2029
  • Brachypodium distachyon
  • SE2530799
  • hAT
  • Hat24
  • Bd5:24857204-24857389
  • GGCTGCGG
  • GCTGCGGCCAGGGGCGGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
G           G         --------     T     -----   CGGTGCTGTAGCACTGGCCTGGCAAGGATGCTCACAAGAGGATTCATCAAG
 GCTGCGGCCAG GGCGGAGCC        AGGCC GGTGC     TAC                                                   
 ||||||||||| |||||||||        ||||| |||||     |||                                                   T
 CGGCGTCGGTC CCGCCTCGG        CTGTT CCTAC     TTC                                                   
            A         TTTTTGGC     -     CACGA   TATCCTGATTACCACAATATGAACACCTAAAATGTATGATTACTTGATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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