SE2550806

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2036
  • Brachypodium distachyon
  • SE2550806
  • PIF/harbinger
  • To6
  • Bd4:28962097-28962297
  • TAA
  • AGAGCATGTACAATACAAGATGACTAGGTGGCTGTTTAGAAAAATTAACCGGTTTTTGTTAAGCACTGATGCTTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              AC   A  A     --T  C      GA     T     -  T   -G          A         AGACT   --C  A    TAA
  AGAGCATGTACAAT  AAG TG CTAGG   GG TGTTTA  AAAAT AACCG GT TTT  TTAAGCACTG TGCTTATTT     AAG   AG TGTC   
  ||||||||||||||  ||| || |||||   || ||||||  ||||| ||||| || |||  |||||||||| |||||||||     |||   || ||||    
  TCTCGTACATGTTA  TTC AC GATTC   CC ACGAAT  TTTTA TTGGT CG GAA  AATTCGTGGT ACGAATAAA     TTC   TC ACGG   
AA              CA   C  -     TGT  -      AC     T     T  T   AA          C         -ACAT   TCC  C    TTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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