Plant MITE

SE2510818

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2048
Brachypodium distachyon
SE2510818
Tc1/Mariner
St2
Bd3:5647557-5647774
TA
TACTACCTCTTTTCCAGTATACGAGGCCTACGCGTATCACTATGT

Secondary structure and sequence

TSD TIR

5'

3'

         -      A       A              A   T  GTAAGATCTAAC    C   CA       -   T  C                    TTTCAAA
TACTACCTC TTTTCC GTATACG GGCCTACGCGTATC CTA GT            CAAT TGA  TGAGTTT ATA CA AAAAATTATATCATTAGAAA       
||||||||| |||||| ||||||| |||||||||||||| ||| ||            |||| |||  ||||||| ||| || ||||||||||||||||||||       T
ATGATGGAG AAAAGG CATATGT CCGGATGCGCATAG GAT TA            GTTA ATT  ACTTAAA TAT GT TTTTTAATATGGTAATCTTT       
         C      C       C              G   C  -GCGATTAAATA    T   AA       A   C  A                    TATCTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510818

TACTACCTCTTTTCCAGTATACGAGGCCTACGCGTATCACTATGTGTAAGATCTAACCAATCTGACATGAGTTTATATCACAAAAATTATATCATTAGAAATTTCAAATGTTCTATTTTCTAATGGTATAATTTTTATGCTATAAAATTCAAATTATATTGATAAATTAGCGATCTAGGGATACGCGTAGGCCCTGTATACCGGAAAACGAGGTAGTA

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