SE2550822

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2052
  • Brachypodium distachyon
  • SE2550822
  • PIF/harbinger
  • To46
  • Bd1:50946283-50946443
  • CTG
  • TGACAACTAGGGATGCAAACGGGATCCCGTGAAAGTCCCGCTTCTAGTTCATTTTTCAAATCTTCTATTCAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 C  A  ACT    A                                      T            C        A    GT
  TG CA   AGGG TGCAAACGGGATCCCGTGAAAGTCCCGCTTCTAGTTCA TTTTCAAATCTT TATTCAAA TTTT  
  || ||   |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||   
  AC GT   TCCC ACGTTTGCCCTAGGGCGCTTTCAGGGCGAAGATCAAGT AAGAGTTTAGAG ATAAGTTT AAGA  
CA  A  CAT    -                                      T            A        -    CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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