SE2550826

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2056
  • Brachypodium distachyon
  • SE2550826
  • PIF/harbinger
  • To48
  • Bd1:52657836-52658118
  • TAA
  • AGGGCACTCCCAATGCATCATATCTTATATTGTATCTTATGCATTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   A       TAT   -    TAT   TT    ----ACACA            TC  ---CCA    TTTTTGTATCCTAGTGTTGTATCTAAACACCCTCTCATTTATTATGTTTTGTGAGAGAAC
  AGGGCACTCCCAATGCATC TATCTTA   TGT ATCT   GCA  AAAT         TTTAGATACAAT  CT      ATGC                                                            
  ||||||||||||||||||| |||||||   ||| ||||   |||  ||||         ||||||||||||  ||      ||||                                                            A
  TCCCGTGAGGGTTACGTGG ATAGAAT   ACG TAGA   CGT  TTTA         GTGGGATAAATT  AC      CTCT                                                            
AA                   C       TGT   G    -TT   -T    GACTACACC            --  TTCTTT    CTCTGTACCATAGAATTAGATCTATGTTGAGAATCGCAACTTGGGTTCTTTTTAGTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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