SE2520833

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2063
  • Brachypodium distachyon
  • SE2520833
  • Mutator
  • M29
  • Bd3:41903989-41904641
  • TTATTATTG
  • GGAGAGAATTTCATATTTGTCACTGAGAATTTGCTCATATGCCAAAATACCACTGAGAATTTACCTGTTCCAAATATGCCAGTCAAATTTTACATGAGGTACAAATGTGCCACTGCCGTTAGCTGACCGTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTATT                      C             A      A    A C           A                  G         A    A    C                    C         -----------------------       TTCATATTGACTGAAATACCCCTGGTCCACAGGTCAGAAAAAAAAAGAAACAAGAAAACTGAAATACCCTCTCGGTCTCTCTCTCCCTCTCTCTCTCTCCACAAATTATGATGAGTTCTAGTCTATTAATTTGCCGAATCTATTATGACTTTTGTGATGTTAATTAAA
        GGAGAGAATTTCATATTTGTCA TGAGAATTTGCTC TATGCC AAAT C ACTGAGAATTT CCTGTTCCAAATATGCCA TCAAATTTT CATG GGTA AAATGTGCCACTGCCGTTAG TGACCGTTA                       AGTCAAT                                                                                                                                                                        
        |||||||||||||||||||||| ||||||||||||| |||||| |||| | ||||||||||| |||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||| |||||||||                       |||||||                                                                                                                                                                         
        TCTCTCTTAAAGTATAAACGGT ACTCTTAAACGGG ATACGG TTTA G TGACTCTTAAA GGACAAGGTTTATACGGT AGTTTAAAA GTGC CCAT TTTATACGGTGATGGCAATC ACTGGCGAT                       TTTCTGT                                                                                                                                                                        
GTTATTAT                      A             C      G    C A           A                  G         C    C    A                    A         CAACTGGCAATTCATCTTCTCCT       TAAAACAGGGATACATCATACAACTACAAGGCAAATGTTGTTTAATGAGTAAAATCTTTTGAATCGAAAGTTCCAAAAATTCTACGGGCATTATGGTAAAACCTCATTCAAAGTCGTTATTACTAAAATCGTACTTTTTACCTTTTAAAGTTGTCGTGAAGAGAACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End