Plant MITE

SE2550835

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2065
Brachypodium distachyon
SE2550835
PIF/harbinger
To20
Bd1:41651203-41651514
TTA
AGGGCATGTAGAGTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT          G     TTGA  A     TTTA   --     -    AAACATGTTGTACAATAGATCATCTCTTAGTGCCATATCTTACAATTAATGCCTAGATGAATAAAATTAATCAAATAAATGTTAAGAAAAGGTGAAATCTAGTACAATTGG
  AGGGCATGTA AGTGG    GA CGTCA    GAT  AAGAC AACA                                                                                                               
  |||||||||| |||||    || |||||    |||  ||||| ||||                                                                                                                
  TCCCGTACAT TTACC    CT GCAGT    GGA  AGAGA GGTG                                                                                                               
AT          G     -CCA  -     ---C   AA     C    TATCCTATTAACGACTACACCTTTTCTCTCTCCACTTCTTTCCATACTCGGAAGAGAATCGATTCTCTACTAGAGAAGTGTTCTTCCTATTCCGTTTCTTTTCCGTTTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550835

TTAGGGCATGTAGAGTGGTTGAGAACGTCATTTAGATAAGACAACAAAACATGTTGTACAATAGATCATCTCTTAGTGCCATATCTTACAATTAATGCCTAGATGAATAAAATTAATCAAATAAATGTTAAGAAAAGGTGAAATCTAGTACAATTGGGAATTTGCCTTTTCTTTGCCTTATCCTTCTTGTGAAGAGATCATCTCTTAGCTAAGAGAAGGCTCATACCTTTCTTCACCTCTCTCTTTTCCACATCAGCAATTATCCTATGTGGCAGAGAAAAGGCTGACGTCACCCCATTGTACATGCCCTTA

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