SE2520843

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2073
  • Brachypodium distachyon
  • SE2520843
  • Mutator
  • M16
  • Bd1:63441490-63441894
  • TTTTTTATT
  • GGTGAAATATCAGGTGAAAACCCTCATTCGGTGCAAACCGTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTTATT      A    A                          --        CTCCACCA    AA         -    CAA      CA        AGAAAA      --   G    ATG               C  AAC    TTT      - TAACAGCGAAAAAAC     C    -         A  TCTGA
         GGTGAA TATC GGTGAAAACCCTCATTCGGTGCAAAC  CGTAAAAA        AAAA  TTCAAAAAA TTCT   AAAAAT  CATATGTT      GTGATG  CTA AAAT   TGTAAAATTTCAAGT CA   TCAA   CATTTG A               AAATT TGCA TGAATAGTG TC     
         |||||| |||| ||||||||||||||||||||||||||  ||||||||        ||||  ||||||||| ||||   ||||||  ||||||||      ||||||  ||| ||||   ||||||||||||||| ||   ||||   |||||| |               ||||| |||| ||||||||| ||     G
         CCGCTT ATAG CCACTTTTGGGAGTAAGCCACGTTTG  GTATTTTT        TTTT  AAGTTTTTT AAGA   TTTTTA  GTATACAA      CACTAT  GAT TTTA   ACGTTTTAAAGTTCA GT   AGTT   GTAAAC T               TTTAA ATGT ACTTATCAC AG     
TTATTTTTT      C    G                          AA        ACTACAAA    CA         T    -TG      TG        CCCTCA      AA   G    --G               A  CTT    TTC      C TCCTTAATTCTTCTC     -    T         -  TTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End