SE2510845

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2075
  • Brachypodium distachyon
  • SE2510845
  • Tc1/Mariner
  • St9
  • Bd3:55424207-55424445
  • TA
  • TACTCCCTCCGTTCGGGTTTATAAGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
             C             -  ACGC       TA     A       C  TA     CATT   A    GAG     -  CGGCAC    A      G     -TCC  ATTG
TACTCCCTCCGTT GGGTTTATAAGGC CC    GGAATTT  TGCCA ACTTTGA CA  AATTA    GGT ATAT   ATTAT TG      AAAG TATATT TTGGA    GT    
||||||||||||| ||||||||||||| ||    |||||||  ||||| ||||||| ||  |||||    ||| ||||   ||||| ||      |||| |||||| |||||    ||     
ATGAGGGAGGCAA CCCAAATATTCCG GG    CTTTAAG  ACGGT TGAAACT GT  TTAAT    TTA TATA   TAATA AC      TTTC ATATGG AATCT    CA    
             A             A  ATAA       -C     G       A  TG     AAGT   A    -AA     T  AAATAT    A      A     TTCT  AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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