SE2510863

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2093
  • Brachypodium distachyon
  • SE2510863
  • Tc1/Mariner
  • St11
  • Bd3:42078285-42078495
  • TA
  • TACTCCCTCCGTTCCACAAAACAACTCATATAGATTTTTTGGGTTTGTTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       A             TT  G     TT   CAATA      GTT    TC    - ---- CCCGCACCCAGCCAATAATAGTTCACA
TACTCCCTCCGTTCCACAAAACA CTCATATAGATTT  TG GTTTG  CCA     TAGCTT   TTTC  TTGG C    T                           
||||||||||||||||||||||| |||||||||||||  || |||||  |||     ||||||   ||||  |||| |    |                           T
ATGAGGGAGGCAAGGTGTTTTGT GAGTATATCTAAA  AC TGAAC  GGT     ATCGAG   AAAG  ATCA G    G                           
                       G             -C  G     CT   --TTC      AGC    --    C GACT GTGAGTATAACCTAATCATAATTTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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