Plant MITE

SE2510869

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2099
Brachypodium distachyon
SE2510869
Tc1/Mariner
St5
Bd1:21367942-21368186
TA
TACTCCCTCCATTTCACAAAGGTTGGCGTATTTTGTTTCGTTAAGACAAGGCTTTGACCAA

Secondary structure and sequence

TSD TIR

5'

3'

                          C                                  -T   A    TATCAATATGTGTTTTTACATACATGAAATTTATATCAATAGATTCGTCTTT
TACTCCCTCCATTTCACAAAGGTTGG GTATTTTGTTTCGTTAAGACAAGGCTTTGACCAA  GAT AGTC                                                    
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||                                                    A
ATGAGGGAGGTAAAGTGTTTCCAACC CATAAAACAAAGCAATTCTGTTCCGAAACTGGTT  TAA TGTG                                                    
                          C                                  CT   -    ATAATTATACATTGTATATATTATGTTTTAGTACTAATAATCTTTCTTGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510869

TACTCCCTCCATTTCACAAAGGTTGGCGTATTTTGTTTCGTTAAGACAAGGCTTTGACCAATGATAAGTCTATCAATATGTGTTTTTACATACATGAAATTTATATCAATAGATTCGTCTTTAAAAGTTCTTTCTAATAATCATGATTTTGTATTATATATGTTACATATTAATAGTGTAATTCTTGGTCAAAGCCTTGTCTTAACGAAACAAAATACCCCAACCTTTGTGAAATGGAGGGAGTA

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