Plant MITE

SE2510871

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2101
Brachypodium distachyon
SE2510871
Tc1/Mariner
St8
Bd3:19217843-19218082
TA
TACTCCCTCCGTCCCTAATTAATTGGCGCCGGCATTTTTGCAAAGAAACCCATGTAAATTCCCGAAATAAACCTGCAGTCCAC

Secondary structure and sequence

TSD TIR

5'

3'

         C                       A                 A        CC     T                    ATTGGAACTTTTGTGAAAAAACCCCTTTAAAT
TACTCCCTC GTCCCTAATTAATTGGCGCCGGC TTTTTGCAAAGAAACCC TGTAAATT  CGAAA AAACCTGCAGTCCACGTTCT                                
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||                                T
ATGAGGGAG CAGGGATTAATTAACCGCGGCCG AAAAACGTTTCTTTGGG ACATTTAA  GCTTT TTTGGACGTCAGGTGTAGAA                                
         A                       G                 G        AA     -                    GTTAATTTGCACCTGACGCGCAATTAAAGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510871

TACTCCCTCCGTCCCTAATTAATTGGCGCCGGCATTTTTGCAAAGAAACCCATGTAAATTCCCGAAATAAACCTGCAGTCCACGTTCTATTGGAACTTTTGTGAAAAAACCCCTTTAAATTTTCGAAATTAACGCGCAGTCCACGTTTAATTGAAGATGTGGACTGCAGGTTTTTTCGAAAATTTACAGGGGTTTCTTTGCAAAAAGGCCGGCGCCAATTAATTAGGGACAGAGGGAGTA

Copy Cancel